Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs73357035 chr10:107930129 T/C 5.88E-5 500 21.6 29.53 13 KM Plot
LGG rs73357045 chr10:107932145 G/A 5.88E-5 500 21.6 29.53 13 KM Plot
LGG rs73369596 chr6:15553577 C/A 2.86E-7 507 23.5 21.6 9.73 KM Plot
LGG rs73591936 chr16:67761825 G/A 4.57E-12 508 21.6 31.05 6.47 KM Plot
LGG rs73598781 chr14:24411714 G/A 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs73600716 chr14:24420329 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs73600717 chr14:24420372 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs73661705 chr8:6185522 C/A 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs73870936 chr3:153674502 T/C 0 506 22.1 22.73 0.23 KM Plot
LGG rs73870937 chr3:153674504 C/T 0 506 22.1 22.73 0.23 KM Plot
LGG rs73890639 chr3:194784260 G/C 4.06E-6 500 21.1 26.23 5.17 KM Plot
LGG rs73890640 chr3:194784428 T/C 4.64E-6 496 21.6 26.23 5.17 KM Plot
LGG rs74026418 chr16:67690633 C/A 9.32E-12 507 21.6 31.63 6.47 KM Plot
LGG rs74026419 chr16:67690634 T/G 9.32E-12 507 21.6 31.63 6.47 KM Plot
LGG rs74036725 chr14:24420323 C/A 4.04E-5 508 23.63 21.15 15.53 KM Plot